Files in ccagc/QDNAseq
Quantitative DNA Sequencing for Chromosomal Aberrations
.Rbuildignore
.github/.travis.yml
.github/workflows/R-CMD-check.yaml
.github/workflows/covr.yaml
.gitignore
DESCRIPTION
Makefile
NAMESPACE
NEWS.md
R/998.LGG150.R
R/999.package.R
R/AllClasses.R
R/AllGenerics.R
R/QDNAseqCopyNumbers-accessors.R
R/QDNAseqReadCounts-accessors.R
R/QDNAseqSignals-accessors.R
R/addPhenodata.R
R/applyFilters.R
R/binReadCounts.R
R/callBins.R
R/compareToReference.R
R/correctBins.R
R/createBinAnnotations.R
R/estimateCorrection.R
R/exportBins.R
R/getBinAnnotations.R
R/highlightFilters.R
R/logTransform.R
R/makeCgh.R
R/normalizeBins.R
R/normalizeSegmentedBins.R
R/plot-methods.R
R/poolRuns.R
R/sdDiffTrim.R
R/segmentBins.R
R/smoothOutlierBins.R
R/utils.R
R/vmsg.R
README.md
data/LGG150.rda
inst/CITATION
inst/WORDLIST
man/LGG150.Rd
man/QDNAseq-defunct.Rd
man/QDNAseq-package.Rd
man/QDNAseqCopyNumbers.Rd
man/QDNAseqReadCounts.Rd
man/QDNAseqSignals.Rd
man/addPhenodata.Rd
man/applyFilters.Rd
man/binReadCounts.Rd
man/callBins.Rd
man/compareToReference.Rd
man/correctBins.Rd
man/createBins.Rd
man/estimateCorrection.Rd
man/exportBins.Rd
man/frequencyPlot.Rd
man/getBinAnnotations.Rd
man/highlightFilters.Rd
man/isobarPlot.Rd
man/makeCgh.Rd
man/noisePlot.Rd
man/normalizeBins.Rd
man/normalizeSegmentedBins.Rd
man/plot.Rd
man/poolRuns.Rd
man/segmentBins.Rd
man/smoothOutlierBins.Rd
revdep/README.md
revdep/failures.md
revdep/problems.md
revdep/run.R
tests/QDNAseq,copyneutral.R
tests/QDNAseq,gain-copyneutral-gain.R
tests/QDNAseq,parallel-reproducibility.R
tests/QDNAseq.R
tests/binReadCounts.R
vignettes/QDNAseq.Rnw
