API for ccagc/QDNAseq
Quantitative DNA sequencing for chromosomal aberrations

Global functions
LGG150 Man page
QDNAseq Man page
QDNAseq-package Man page
QDNAseqCopyNumbers Man page
QDNAseqCopyNumbers-class Man page
QDNAseqReadCounts Man page
QDNAseqReadCounts-class Man page
QDNAseqSignals Man page
QDNAseqSignals-class Man page
addPhenodata Man page Source code
applyFilters Man page
applyFilters,QDNAseqReadCounts-method Man page
betterCall Source code
binReadCounts Man page Source code
binReadCountsPerChunk Source code
binReadCountsPerSample Source code
bpend,QDNAseqSignals-method Man page
bpstart,QDNAseqSignals-method Man page
calculateBlacklist Man page Source code
calculateBlacklistByRegions Man page Source code
calculateMappability Man page Source code
callBins Man page
callBins,QDNAseqCopyNumbers-method Man page
chromosomes,QDNAseqSignals-method Man page
compareToReference Man page
compareToReference,QDNAseqCopyNumbers,numeric-method Man page
correctBins Man page
correctBins,QDNAseqReadCounts-method Man page
createBins Man page Source code
downloadBinAnnotations Man page
estimateCorrection Man page
estimateCorrection,QDNAseqReadCounts-method Man page
expectedVariance Source code
exportBins Man page Source code
exportBins,QDNAseqSignals-method Man page
exportSEG Source code
exportVCF Source code
fapply Source code
flapply Source code
frequencyPlot Man page
frequencyPlot,QDNAseqCopyNumbers,missing-method Man page
getBinAnnotations Man page Source code
highlightFilters Man page
highlightFilters,QDNAseqSignals-method Man page
importReadCounts Source code
isobarPlot Man page
isobarPlot,QDNAseqReadCounts,missing-method Man page
iterateResiduals Man page Source code
log2adhoc Source code
log2offset Source code
makeCgh Man page
makeCgh,QDNAseqCopyNumbers-method Man page
noisePlot Man page
noisePlot,QDNAseqReadCounts,missing-method Man page
normalizeBins Man page
normalizeBins,QDNAseqCopyNumbers-method Man page
normalizeSegmentedBins Man page
normalizeSegmentedBins,QDNAseqCopyNumbers-method Man page
plot Man page
plot,QDNAseqSignals,missing-method Man page
poolRuns Man page
poolRuns,QDNAseqSignals,character-method Man page
sdDiffTrim Source code
segmentBins Man page
segmentBins,QDNAseqCopyNumbers-method Man page
smoothOutlierBins Man page
smoothOutlierBins,QDNAseqCopyNumbers-method Man page
sqrtadhoc Source code
sqrtfactor Source code
sqrtoffset Source code
vmsg Source code
ccagc/QDNAseq documentation built on May 12, 2017, 12:10 a.m.