frequencyPlot: Plot copy number aberration frequencies

In ccagc/QDNAseq: Quantitative DNA Sequencing for Chromosomal Aberrations

Plot copy number aberration frequencies

Description

Plot copy number aberration frequencies.

Usage

frequencyPlot(x, y, ...)

Arguments

x	A QDNAseqCopyNumbers object with calls data.
y	missing
...	...

Author(s)

Ilari Scheinin

Examples

data(LGG150)
readCounts <- LGG150
readCountsFiltered <- applyFilters(readCounts)
readCountsFiltered <- estimateCorrection(readCountsFiltered)
copyNumbers <- correctBins(readCountsFiltered)
copyNumbersNormalized <- normalizeBins(copyNumbers)
copyNumbersSmooth <- smoothOutlierBins(copyNumbersNormalized)
copyNumbersSegmented <- segmentBins(copyNumbersSmooth)
copyNumbersSegmented <- normalizeSegmentedBins(copyNumbersSegmented)
copyNumbersCalled <- callBins(copyNumbersSegmented)
frequencyPlot(copyNumbersCalled)

ccagc/QDNAseq documentation built on July 28, 2024, 3:46 p.m.