revdep/README.md

In ccagc/QDNAseq: Quantitative DNA Sequencing for Chromosomal Aberrations

Platform

|field |value | |:--------|:-------------------------------------------| |version |R version 3.6.1 Patched (2019-08-27 r77078) | |os |Ubuntu 18.04.3 LTS | |system |x86_64, linux-gnu | |ui |X11 | |language |en | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |America/Los_Angeles | |date |2019-09-03 |

Dependencies

|package |old |new |Δ | |:----------------|:-----------|:-----------|:--| |QDNAseq |1.21.1-9000 |1.21.2-9000 |* | |BH |1.69.0-1 |1.69.0-1 | | |Biobase |2.44.0 |2.44.0 | | |BiocGenerics |0.30.0 |0.30.0 | | |BiocParallel |1.18.1 |1.18.1 | | |Biostrings |2.52.0 |2.52.0 | | |bitops |1.0-6 |1.0-6 | | |CGHbase |1.44.0 |1.44.0 | | |CGHcall |2.46.0 |2.46.0 | | |codetools |0.2-16 |0.2-16 | | |digest |0.6.20 |0.6.20 | | |DNAcopy |1.58.0 |1.58.0 | | |formatR |1.7 |1.7 | | |futile.logger |1.4.3 |1.4.3 | | |futile.options |1.0.1 |1.0.1 | | |future |1.14.0 |1.14.0 | | |future.apply |1.3.0 |1.3.0 | | |GenomeInfoDb |1.20.0 |1.20.0 | | |GenomeInfoDbData |1.2.1 |1.2.1 | | |GenomicRanges |1.36.0 |1.36.0 | | |globals |0.12.4 |0.12.4 | | |impute |1.58.0 |1.58.0 | | |IRanges |2.18.2 |2.18.2 | | |lambda.r |1.2.3 |1.2.3 | | |limma |3.40.6 |3.40.6 | | |listenv |0.7.0 |0.7.0 | | |marray |1.62.0 |1.62.0 | | |matrixStats |0.54.0 |0.54.0 | | |R.methodsS3 |1.7.1 |1.7.1 | | |R.oo |1.22.0 |1.22.0 | | |R.utils |2.9.0 |2.9.0 | | |RCurl |1.95-4.12 |1.95-4.12 | | |Rhtslib |1.16.1 |1.16.1 | | |Rsamtools |2.0.0 |2.0.0 | | |S4Vectors |0.22.0 |0.22.0 | | |snow |0.4-3 |0.4-3 | | |snowfall |1.84-6.1 |1.84-6.1 | | |XVector |0.24.0 |0.24.0 | | |zlibbioc |1.30.0 |1.30.0 | |

Revdeps

All (5)

|package |version |error |warning |note | |:---------------------------------------|:-------|:-----|:-------|:----| |ACE |1.2.0 | | |2 | |GeneBreak |1.14.0 | | |1 | |HiCcompare |1.6.0 | | |3 | |QDNAseq.hg19 |1.14.0 | | |1 | |QDNAseq.mm10 |1.14.0 | | |1 |

ccagc/QDNAseq documentation built on July 28, 2024, 3:46 p.m.