CGHcall: Calling aberrations for array CGH tumor profiles.

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CGHcall")
AuthorMark van de Wiel, Sjoerd Vosse
Bioconductor views Microarray Preprocessing Visualization
Date of publicationNone
MaintainerMark van de Wiel <mark.vdwiel@vumc.nl>
LicenseGPL (http://www.gnu.org/copyleft/gpl.html)
Version2.38.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/CGHcall.R R/preprocess.R R/private.R
build
build/vignette.rds
data
data/Wilting.txt
inst
inst/doc
inst/doc/CGHcall.R
inst/doc/CGHcall.Rnw
inst/doc/CGHcall.pdf
man
man/CGHcall-package.Rd man/CGHcall.Rd man/ExpandCGHcall.Rd man/Wilting.Rd man/normalize.Rd man/postsegnormalize.Rd man/preprocess.Rd man/segmentData.Rd
vignettes
vignettes/CGHcall.Rnw
vignettes/CGHcall.bib

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