CGHcall: Calling aberrations for array CGH tumor profiles.

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

AuthorMark van de Wiel, Sjoerd Vosse
Date of publicationNone
MaintainerMark van de Wiel <mark.vdwiel@vumc.nl>
LicenseGPL (http://www.gnu.org/copyleft/gpl.html)
Version2.36.0

View on Bioconductor

Files

CGHcall/DESCRIPTION
CGHcall/NAMESPACE
CGHcall/R
CGHcall/R/CGHcall.R CGHcall/R/preprocess.R CGHcall/R/private.R
CGHcall/build
CGHcall/build/vignette.rds
CGHcall/data
CGHcall/data/Wilting.txt
CGHcall/inst
CGHcall/inst/doc
CGHcall/inst/doc/CGHcall.R
CGHcall/inst/doc/CGHcall.Rnw
CGHcall/inst/doc/CGHcall.pdf
CGHcall/man
CGHcall/man/CGHcall-package.Rd CGHcall/man/CGHcall.Rd CGHcall/man/ExpandCGHcall.Rd CGHcall/man/Wilting.Rd CGHcall/man/normalize.Rd CGHcall/man/postsegnormalize.Rd CGHcall/man/preprocess.Rd CGHcall/man/segmentData.Rd
CGHcall/vignettes
CGHcall/vignettes/CGHcall.Rnw
CGHcall/vignettes/CGHcall.bib

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