Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.
|Author||Mark van de Wiel, Sjoerd Vosse|
|Date of publication||None|
|Maintainer||Mark van de Wiel <email@example.com>|
CGHcall: Calling aberrations for array CGH tumor profiles.
CGHcall-package: Calling aberrations for array CGH tumor profiles.
ExpandCGHcall: Expands result fron CGHcall to CGHcall object.
normalize: Normalization and cellularity adjustment for arrayCGH data.
postsegnormalize: Post-segmentation normalization
preprocess: Preprocess arrayCGH data
segmentData: Breakpoint detection for arrayCGH data.
Wilting: Cervical cancer arrayCGH data