RTCGA/RTCGA: The Cancer Genome Atlas Data Integration

The Cancer Genome Atlas (TCGA) Data Portal provides a platform for researchers to search, download, and analyze data sets generated by TCGA. It contains clinical information, genomic characterization data, and high level sequence analysis of the tumor genomes. The key is to understand genomics to improve cancer care. RTCGA package offers download and integration of the variety and volume of TCGA data using patient barcode key, what enables easier data possession. This may have an benefcial infuence on impact on development of science and improvement of patients' treatment. Furthermore, RTCGA package transforms TCGA data to tidy form which is convenient to use.

Getting started

Package details

Bioconductor views DNAMethylation DataImport DataRepresentation ImmunoOncology Preprocessing PrincipalComponent RNASeq Software Survival Visualization
MaintainerMarcin Kosinski <m.p.kosinski@gmail.com>
URL https://rtcga.github.io/RTCGA
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
RTCGA/RTCGA documentation built on Nov. 1, 2022, 8:15 p.m.