installTCGA: Install Data Packages from RTCGA Family

In RTCGA/RTCGA: The Cancer Genome Atlas Data Integration

Install Data Packages from RTCGA Family

Description

Function installs data packages from https://github.com/RTCGA/. Packages are listed in datasetsTCGA.

Usage

installTCGA(
  packages = c("RTCGA.clinical.20160128", "RTCGA.mutations.20160128",
    "RTCGA.rnaseq.20160128", "RTCGA.RPPA.20160128", "RTCGA.mRNA.20160128",
    "RTCGA.CNV.20160128", "RTCGA.miRNASeq.20160128", "RTCGA.PANCAN12.20160128",
    "RTCGA.methylation.20160128"),
  build_vignettes = TRUE,
  ...
)

Arguments

packages	A character specifing the names of the data packages to be installed. By default installs all packages from .20160128 release.
build_vignettes	Should vignettes be build.
...	Further arguments passed to install_github.

Issues

If you have any problems, issues or think that something is missing or is not clear please post an issue on https://github.com/RTCGA/RTCGA/issues.

Author(s)

Marcin Kosinski, [e-mail]

See Also

RTCGA website http://rtcga.github.io/RTCGA.

Other RTCGA: RTCGA-package, boxplotTCGA(), checkTCGA(), convertTCGA(), datasetsTCGA, downloadTCGA(), expressionsTCGA(), heatmapTCGA(), infoTCGA(), kmTCGA(), mutationsTCGA(), pcaTCGA(), readTCGA(), survivalTCGA(), theme_RTCGA()

Examples

## Not run: 
installTCGA() # it installs all!!! of them
installTCGA('RTCGA.clinical.20160128')

## End(Not run)

RTCGA/RTCGA documentation built on Nov. 1, 2022, 8:15 p.m.