infoTCGA: Information About Cohorts from TCGA Project

In RTCGA/RTCGA: The Cancer Genome Atlas Data Integration

Information About Cohorts from TCGA Project

Description

Function restores codes and counts for each cohort from TCGA project.

Usage

infoTCGA()

Value

A list with a tabular information from https://gdac.broadinstitute.org/.

Issues

If you have any problems, issues or think that something is missing or is not clear please post an issue on https://github.com/RTCGA/RTCGA/issues.

Author(s)

Marcin Kosinski, [e-mail]

See Also

RTCGA website https://rtcga.github.io/RTCGA/articles/Data_Download.html.

Other RTCGA: RTCGA-package, boxplotTCGA(), checkTCGA(), convertTCGA(), datasetsTCGA, downloadTCGA(), expressionsTCGA(), heatmapTCGA(), installTCGA(), kmTCGA(), mutationsTCGA(), pcaTCGA(), readTCGA(), survivalTCGA(), theme_RTCGA()

Examples

infoTCGA()
library(magrittr)
(cohorts <- infoTCGA() %>% 
rownames() %>% 
   sub('-counts', '', x=.))
   
# in knitr chunk -> results='asis'   
knitr::kable(infoTCGA())

RTCGA/RTCGA documentation built on Nov. 1, 2022, 8:15 p.m.