datasetsTCGA | R Documentation |
Snapshots of the clinical, mutations, CNVs, rnaseq, RPPA, mRNA, miRNASeq and methylation datasets from the 2016-01-28
release date (check all dates of release with checkTCGA('Dates')
) are included in the RTCGA
family (factory) that contains below packages:
RTCGA.rnaseq.20160128 rnaseq.20160128
RTCGA.clinical.20160128 clinical.20160128
RTCGA.mutations.20160128 mutations.20160128
RTCGA.CNV.20160128 CNV.20160128
RTCGA.RPPA.20160128 RPPA.20160128
RTCGA.mRNA.20160128 mRNA.20160128
RTCGA.miRNASeq.20160128 miRNASeq.20160128
RTCGA.methylation.20160128 methylation.20160128
Snapshots of the clinical, mutations, CNVs, rnaseq, RPPA, mRNA, miRNASeq and methylation datasets from the 2015-11-01
release date (check all dates of release with checkTCGA('Dates')
) are also included in the RTCGA
family (factory).
RTCGA.rnaseq rnaseq
RTCGA.clinical clinical
RTCGA.mutations mutations
RTCGA.CNV CNV
RTCGA.RPPA RPPA
RTCGA.mRNA mRNA
RTCGA.miRNASeq miRNASeq
RTCGA.methylation methylation
RTCGA.PANCAN12 (not from TCGA)
For more detailed information visit RTCGA family website https://rtcga.github.io/RTCGA. One can install all data packages with installTCGA.
If you have any problems, issues or think that something is missing or is not clear please post an issue on https://github.com/RTCGA/RTCGA/issues.
Marcin Kosinski [aut, cre] m.p.kosinski@gmail.com
Przemyslaw Biecek [aut] przemyslaw.biecek@gmail.com
Witold Chodor [aut] witoldchodor@gmail.com
RTCGA website http://rtcga.github.io/RTCGA.
Other RTCGA:
RTCGA-package
,
boxplotTCGA()
,
checkTCGA()
,
convertTCGA()
,
downloadTCGA()
,
expressionsTCGA()
,
heatmapTCGA()
,
infoTCGA()
,
installTCGA()
,
kmTCGA()
,
mutationsTCGA()
,
pcaTCGA()
,
readTCGA()
,
survivalTCGA()
,
theme_RTCGA()
# installation of packages containing snapshots # of TCGA project's datasets ## Not run: ## RTCGA GitHub development newest versions library(RTCGA) ?installTCGA ## Bioconductor releases for data from 2016-01-28 release source('http://bioconductor.org/biocLite.R') biocLite(RTCGA.clinical.20160128) biocLite(RTCGA.mutations.20160128) biocLite(RTCGA.rnaseq.20160128) biocLite(RTCGA.CNV.20160128) biocLite(RTCGA.RPPA.20160128) biocLite(RTCGA.mRNA.20160128) biocLite(RTCGA.miRNASeq.20160128) biocLite(RTCGA.methylation.20160128) ## Bioconductor releases for data from 2015-11-01 release source('http://bioconductor.org/biocLite.R') biocLite(RTCGA.clinical) biocLite(RTCGA.mutations) biocLite(RTCGA.rnaseq) biocLite(RTCGA.CNV) biocLite(RTCGA.RPPA) biocLite(RTCGA.mRNA) biocLite(RTCGA.miRNASeq) biocLite(RTCGA.methylation) # use cases and examples + more data info browseVignettes('RTCGA') ## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.