pepStat: Statistical analysis of peptide microarrays

Statistical analysis of peptide microarrays

Author
Raphael Gottardo, Gregory C Imholte, Renan Sauteraud, Mike Jiang
Date of publication
None
Maintainer
Gregory C Imholte <gimholte@uw.edu>
License
Artistic-2.0
Version
1.8.0
URLs

View on Bioconductor

Man pages

baseline_correct
Substract baseline intensities
baselineCorrect.pSet
Substract baseline intensities
create_db
Create a peptide collection
makeCalls
Make antibody binding positivity calls
makePeptideSet
peptideSet constructor
normalizeArray
Normalize tiling array data using sequence information
peptideSet
peptideSet class
peptideSet-methods
peptideSet methods
plotArray
Plot microarray images
restab
Result table
shinyPepStat
Launch the pepStat Shiny Application
slidingMean
Data smoothing for peptide microarray.
summarizePeptides
Add information to a peptideSet and summarize peptides

Files in this package

pepStat/DESCRIPTION
pepStat/NAMESPACE
pepStat/R
pepStat/R/AllClasses.R
pepStat/R/AllMethods.R
pepStat/R/create_db.R
pepStat/R/import.R
pepStat/R/internal.R
pepStat/R/makeCalls.R
pepStat/R/makePeptideSet.R
pepStat/R/normalizeArray.R
pepStat/R/plotArrayImage.R
pepStat/R/results.R
pepStat/R/shinyPepStat.R
pepStat/R/slidingMean.R
pepStat/R/summarizePeptides.R
pepStat/build
pepStat/build/vignette.rds
pepStat/examples
pepStat/examples/pipeline.R
pepStat/inst
pepStat/inst/doc
pepStat/inst/doc/pepStat.R
pepStat/inst/doc/pepStat.Rnw
pepStat/inst/doc/pepStat.pdf
pepStat/inst/shiny
pepStat/inst/shiny/common_functions.R
pepStat/inst/shiny/scripts.js
pepStat/inst/shiny/server.R
pepStat/inst/shiny/styles.css
pepStat/inst/shiny/tooltips.js
pepStat/inst/shiny/ui.R
pepStat/inst/shiny/www
pepStat/inst/shiny/www/opentip
pepStat/inst/shiny/www/opentip/opentip-jquery.min.js
pepStat/inst/shiny/www/opentip/opentip.css
pepStat/man
pepStat/man/baselineCorrect.pSet.Rd
pepStat/man/baseline_correct.Rd
pepStat/man/create_db.Rd
pepStat/man/makeCalls.Rd
pepStat/man/makePeptideSet.Rd
pepStat/man/normalizeArray.Rd
pepStat/man/peptideSet-methods.Rd
pepStat/man/peptideSet.Rd
pepStat/man/plotArray.Rd
pepStat/man/restab.Rd
pepStat/man/shinyPepStat.Rd
pepStat/man/slidingMean.Rd
pepStat/man/summarizePeptides.Rd
pepStat/vignettes
pepStat/vignettes/pepStat.Rnw