pepStat: Statistical analysis of peptide microarrays

Statistical analysis of peptide microarrays

AuthorRaphael Gottardo, Gregory C Imholte, Renan Sauteraud, Mike Jiang
Date of publicationNone
MaintainerGregory C Imholte <gimholte@uw.edu>
LicenseArtistic-2.0
Version1.8.0
https://github.com/RGLab/pepStat

View on Bioconductor

Functions

baseline_correct Man page
baselineCorrect.pSet Man page
clade Man page
clade,GRanges-method Man page
clade-methods Man page
clade,peptideSet-method Man page
create_db Man page
end,peptideSet-method Man page
featureID Man page
featureID-method Man page
featureID,peptideSet-method Man page
makeCalls Man page
makePeptideSet Man page
normalizeArray Man page
NormalizeArray Man page
peptide Man page
peptide<- Man page
peptide-method Man page
peptide<-,peptideSet,character-method Man page
peptide,peptideSet-method Man page
peptideSet Man page
[,peptideSet,ANY,ANY,ANY-method Man page
peptideSet-class Man page
peptideSet-methods Man page
pepZscore Man page
pepZscore<- Man page
pepZscore<-,GRanges,data.frame-method Man page
pepZscore,GRanges-method Man page
pepZscore-method Man page
pepZscore<-,peptideSet,data.frame-method Man page
pepZscore,peptideSet-method Man page
plotArrayImage Man page
plotArrayResiduals Man page
position Man page
position-method Man page
position,peptideSet-method Man page
ranges<-,peptideSet-method Man page
ranges,peptideSet-method Man page
restab Man page
shinyPepStat Man page
show,peptideSet-method Man page
slidingMean Man page
start,peptideSet-method Man page
subset,peptideSet-method Man page
summarizePeptides Man page
summary,peptideSet-method Man page
values,peptideSet-method Man page
width,peptideSet-method Man page

Files

pepStat/DESCRIPTION
pepStat/NAMESPACE
pepStat/R
pepStat/R/AllClasses.R pepStat/R/AllMethods.R pepStat/R/create_db.R pepStat/R/import.R pepStat/R/internal.R pepStat/R/makeCalls.R pepStat/R/makePeptideSet.R pepStat/R/normalizeArray.R pepStat/R/plotArrayImage.R pepStat/R/results.R pepStat/R/shinyPepStat.R pepStat/R/slidingMean.R pepStat/R/summarizePeptides.R
pepStat/build
pepStat/build/vignette.rds
pepStat/examples
pepStat/examples/pipeline.R
pepStat/inst
pepStat/inst/doc
pepStat/inst/doc/pepStat.R
pepStat/inst/doc/pepStat.Rnw
pepStat/inst/doc/pepStat.pdf
pepStat/inst/shiny
pepStat/inst/shiny/common_functions.R
pepStat/inst/shiny/scripts.js
pepStat/inst/shiny/server.R
pepStat/inst/shiny/styles.css
pepStat/inst/shiny/tooltips.js
pepStat/inst/shiny/ui.R
pepStat/inst/shiny/www
pepStat/inst/shiny/www/opentip
pepStat/inst/shiny/www/opentip/opentip-jquery.min.js
pepStat/inst/shiny/www/opentip/opentip.css
pepStat/man
pepStat/man/baselineCorrect.pSet.Rd pepStat/man/baseline_correct.Rd pepStat/man/create_db.Rd pepStat/man/makeCalls.Rd pepStat/man/makePeptideSet.Rd pepStat/man/normalizeArray.Rd pepStat/man/peptideSet-methods.Rd pepStat/man/peptideSet.Rd pepStat/man/plotArray.Rd pepStat/man/restab.Rd pepStat/man/shinyPepStat.Rd pepStat/man/slidingMean.Rd pepStat/man/summarizePeptides.Rd
pepStat/vignettes
pepStat/vignettes/pepStat.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.