API for pepStat
Statistical analysis of peptide microarrays

Global functions
NormalizeArray Man page
[,peptideSet,ANY,ANY,ANY-method Man page
applySlidingMean Source code
baselineCorrect.pSet Man page Source code
baseline_correct Man page Source code
bgCorrect.pSet Source code
checkArgs_sumPeps Source code
check_peptideSet Source code
clade Man page
clade,GRanges-method Man page
clade,peptideSet-method Man page
clade-methods Man page
computeZpep Source code
create_db Man page Source code
end,peptideSet-method Man page
featureID Man page
featureID,peptideSet-method Man page
featureID-method Man page
findFDR Source code
getPlotCoords Source code
getPlotGrid Source code
getWeightedEstimator Source code
getZpep Source code
makeCalls Man page Source code
makePeptideSet Man page Source code
makeResiduals Source code
makeZpepMatrix Source code
normalizeArray Man page Source code
pepZscore Man page
pepZscore,GRanges-method Man page
pepZscore,peptideSet-method Man page
pepZscore-method Man page
pepZscore<- Man page
pepZscore<-,GRanges,data.frame-method Man page
pepZscore<-,peptideSet,data.frame-method Man page
peptide Man page
peptide,peptideSet-method Man page
peptide-method Man page
peptide<- Man page
peptide<-,peptideSet,character-method Man page
peptideSet Man page
peptideSet-class Man page
peptideSet-methods Man page
plotArrayImage Man page Source code
plotArrayResiduals Man page Source code
position Man page
position,peptideSet-method Man page
position-method Man page
ranges,peptideSet-method Man page
ranges<-,peptideSet-method Man page
restab Man page Source code
sanitize_mapping_file2 Source code
set_rownames Source code
shinyPepStat Man page Source code
show,peptideSet-method Man page
slidingMean Man page Source code
smoothResiduals Source code
start,peptideSet-method Man page
subset,peptideSet-method Man page
summarizePeptides Man page Source code
summary,peptideSet-method Man page
values,peptideSet-method Man page
width,peptideSet-method Man page
pepStat documentation built on Nov. 17, 2017, 9:58 a.m.