HMMcopy: Copy number prediction with correction for GC and mappability bias for HTS data

Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.

Package details

AuthorDaniel Lai, Gavin Ha, Sohrab Shah
Bioconductor views CopyNumberVariation Microarray Preprocessing Sequencing Visualization
MaintainerDaniel Lai <[email protected]>, Sohrab Shah <[email protected]>
Package repositoryView on Bioconductor
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HMMcopy documentation built on Nov. 1, 2018, 2:12 a.m.