Rsubread: Subread sequence alignment and counting for R
Version 1.30.5

Rsubread is a toolbox developed for the analyses of second and third generation sequencing data. It can be used for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. It can be applied to all major sequencing techologies and it is suitable for the analysis of both short and long reads.

Package details

AuthorWei Shi and Yang Liao with contributions from Gordon K Smyth, Jenny Dai and Timothy Triche, Jr.
Bioconductor views Alignment ChIPSeq GeneExpression GeneRegulation GeneticVariability Genetics GenomeAnnotation Preprocessing QualityControl RNASeq SNP SequenceMatching Sequencing Software
Date of publication2018-07-11
MaintainerWei Shi <[email protected]>, Yang Liao <[email protected]> and Gordon K Smyth <[email protected]>
LicenseGPL-3
Version1.30.5
URL http://bioconductor.org/packages/release/bioc/html/Rsubread.html
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Rsubread")

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Rsubread documentation built on July 14, 2018, 2 a.m.