Rsubread: Subread Sequence Alignment and Counting for R

Alignment, quantification and analysis of second and third generation sequencing data. Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. Can be applied to all major sequencing techologies and to both short and long sequence reads.

Package details

AuthorWei Shi, Yang Liao and Gordon K Smyth with contributions from Jenny Dai
Bioconductor views Alignment ChIPSeq GeneExpression GeneFusionDetection GeneRegulation GeneticVariability Genetics GenomeAnnotation ImmunoOncology IndelDetection MultipleSequenceAlignment Preprocessing QualityControl RNASeq SNP SequenceMatching Sequencing VariantAnnotation VariantDetection
MaintainerWei Shi <[email protected]>, Yang Liao <[email protected]> and Gordon K Smyth <[email protected]>
LicenseGPL-3
Version1.34.7
URL http://bioconductor.org/packages/Rsubread
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Rsubread")

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Rsubread documentation built on Sept. 6, 2019, 2 a.m.