Alignment, quantification and analysis of RNA sequencing data (including both bulk RNA-seq and scRNA-seq) and DNA sequenicng data (including ATAC-seq, ChIP-seq, WGS, WES etc). Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. Can be applied to all major sequencing techologies and to both short and long sequence reads.
|Author||Wei Shi, Yang Liao and Gordon K Smyth with contributions from Jenny Dai|
|Bioconductor views||Alignment ChIPSeq GeneExpression GeneFusionDetection GeneRegulation GeneticVariability Genetics GenomeAnnotation ImmunoOncology IndelDetection MultipleSequenceAlignment Preprocessing QualityControl RNASeq SNP SequenceMatching Sequencing SingleCell VariantAnnotation VariantDetection|
|Maintainer||Wei Shi <firstname.lastname@example.org>, Yang Liao <email@example.com> and Gordon K Smyth <firstname.lastname@example.org>|
|Package repository||View on Bioconductor|
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