Alignment, quantification and analysis of second and third generation sequencing data. Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. Can be applied to all major sequencing techologies and to both short and long sequence reads.
|Author||Wei Shi, Yang Liao and Gordon K Smyth with contributions from Jenny Dai|
|Bioconductor views||Alignment ChIPSeq GeneExpression GeneFusionDetection GeneRegulation GeneticVariability Genetics GenomeAnnotation ImmunoOncology IndelDetection MultipleSequenceAlignment Preprocessing QualityControl RNASeq SNP SequenceMatching Sequencing VariantAnnotation VariantDetection|
|Maintainer||Wei Shi <[email protected]>, Yang Liao <[email protected]> and Gordon K Smyth <[email protected]>|
|Package repository||View on Bioconductor|
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