Biocview "MultipleSequenceAlignment"

Analyze high-throughput sequencing of T and B cell receptors

An R interface to the Rfam database

An R package for RNA visualization and analysis

an R package for visualization of tree and annotation data

Base Classes and Functions for Phylogenetic Tree Input and Output

Compute the automorphisms between DNA's Abelian group representations

Cut rDNA Sequences Into Domains Using Covariance Models

Design Degenerate Oligos from a Multiple DNA Sequence Alignment

Detection of site fixation in molecular evolution

Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens

Interface to Call Programs from Infernal RNA Covariance Model Package

LowMACA - Low frequency Mutation Analysis via Consensus Alignment

Mapping, quantification and variant analysis of sequencing data

Multiple Sequence Alignment

Multiple Sequence Alignment with MUSCLE

Outlier detection in multiple sequence alignments

Phylogeny-based sequence clustering with site polymorphism

Plot Multiple Sequence Alignment using 'ggplot2'

Prediction of Protein Conserved Regions Using NADDA Algorithm

Rapid Comparison of Surface Protein Isoform Membrane Topologies Through surfaltr

SIMD Partial Order Alignment in R

Synteny Alignment and Analysis for Saccharomyces sensu stricto

Visualization of Phylogenetic Networks