Takkoona/sitePath: Detection of site fixation in molecular evolution

The package does hierarchical search for fixation mutations given multiple sequence alignment and phylogenetic tree. These fixation mutations can be specific to a phylogenetic lineages or shared by multiple lineages. The package also provides visualization of these mutations on the tree.

Getting started

Package details

Bioconductor views Alignment MultipleSequenceAlignment Phylogenetics SNP Software
Maintainer
LicenseMIT + file LICENSE
Version1.9.1
URL https://wuaipinglab.github.io/sitePath/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Takkoona/sitePath")
Takkoona/sitePath documentation built on June 17, 2021, 4:28 p.m.