Takkoona/sitePath: Detection of sites with fixation of amino acid substitutions in protein evolution

The package does hierarchical search for fixation events given multiple sequence alignment and phylogenetic tree. These fixation events can be specific to a phylogenetic lineages or shared by multiple lineages.

Getting started

Package details

AuthorChengyang Ji, Aiping Wu
Bioconductor views Alignment MultipleSequenceAlignment Software
MaintainerChengyang Ji <[email protected]>
LicenseMIT + file LICENSE
Version0.99.26
URL https://wuaipinglab.github.io/sitePath/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Takkoona/sitePath")
Takkoona/sitePath documentation built on April 12, 2019, 11:09 p.m.