fixationIndels: Fixation indels prediction

In Takkoona/sitePath: Phylogeny-based sequence clustering with site polymorphism

Fixation indels prediction

Description

The fixation of insertions of deletions.

Usage

fixationIndels(x, ...)

## S3 method for class 'sitesMinEntropy'
fixationIndels(x, ...)

Arguments

x	The return from sitesMinEntropy function.
...	Other arguments.

Value

A fixationIndels object.

Examples

data(zikv_tree_reduced)
data(zikv_align_reduced)
tree <- addMSA(zikv_tree_reduced, alignment = zikv_align_reduced)
fixationIndels(sitesMinEntropy(tree))

Takkoona/sitePath documentation built on Sept. 28, 2022, 1:24 a.m.