similarityMatrix: Similarity between sequences
In Takkoona/sitePath: Phylogeny-based sequence clustering with site polymorphism
similarityMatrix R Documentation
Similarity between sequences
Description
Get similarity between aligned sequences with gap ignored.
Usage
similarityMatrix(tree)
Arguments
tree
The return from addMSA function.
Value
A diagonal matrix of similarity between sequences.
Examples
data(zikv_tree)
data(zikv_align)
tree <- addMSA(zikv_tree, alignment = zikv_align)
simMatrix <- similarityMatrix(tree)
Takkoona/sitePath documentation built on Sept. 28, 2022, 1:24 a.m.
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| similarityMatrix | R Documentation |
Similarity between sequences
Description
Get similarity between aligned sequences with gap ignored.
Usage
similarityMatrix(tree)
Arguments
tree |
The return from |
Value
A diagonal matrix of similarity between sequences.
Examples
data(zikv_tree) data(zikv_align) tree <- addMSA(zikv_tree, alignment = zikv_align) simMatrix <- similarityMatrix(tree)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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