plotParallelSites: Plot the result of fixation sites

In Takkoona/sitePath: Phylogeny-based sequence clustering with site polymorphism

Plot the result of fixation sites

Description

Visualize the results of paraFixSites

Usage

plotParallelSites(x, ...)

## S3 method for class 'parallelSites'
plotParallelSites(x, site = NULL, ...)

## S3 method for class 'paraFixSites'
plotParallelSites(x, site = NULL, ...)

Arguments

x	return from paraFixSites
...	further arguments passed to or from other methods.
site	the number of the site according to setSiteNumbering

Value

A ggplot object.

Examples

data(zikv_tree)
data(zikv_align)
paraFix <- paraFixSites(zikv_tree, alignment = zikv_align)
plotParallelSites(paraFix)

Takkoona/sitePath documentation built on Sept. 28, 2022, 1:24 a.m.