treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

Package details

AuthorGuangchuang Yu [aut, cre] (<>), Tommy Tsan-Yuk Lam [ctb, ths], Casey Dunn [ctb], Bradley Jones [ctb], Tyler Bradley [ctb], Shuangbin Xu [ctb] (<>), Konstantinos Geles [ctb]
Bioconductor views Alignment Annotation Clustering DataImport DataRepresentation MultipleSequenceAlignment Phylogenetics Software
MaintainerGuangchuang Yu <>
URL (devel) (docs) (book)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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treeio documentation built on Nov. 21, 2020, 2:01 a.m.