treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

Package details

AuthorGuangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>), Tommy Tsan-Yuk Lam [ctb, ths], Casey Dunn [ctb], Bradley Jones [ctb], Tyler Bradley [ctb], Shuangbin Xu [ctb]
Bioconductor views Alignment Annotation Clustering DataImport DataRepresentation MultipleSequenceAlignment Software
MaintainerGuangchuang Yu <[email protected]>
LicenseArtistic-2.0
Version1.10.0
URL https://yulab-smu.github.io/treedata-book/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("treeio")

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treeio documentation built on Oct. 31, 2019, 3:22 a.m.