treeio: Base classes and functions for phylogenetic tree input and output

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‘treeio’ is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

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:writing_hand: Authors

Guangchuang YU

School of Basic Medical Sciences, Southern Medical University

If you use treeio in published research, please cite:

:arrow_double_down: Installation

Get the released version from Bioconductor:

## try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
## BiocManager::install("BiocUpgrade") ## you may need this

Or the development version from github:

## install.packages("devtools")

:sparkling_heart: Contributing

We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.

:houses: Package Affiliations

The treeio package is a part of the Bioconductor and rOpenSci projects.

| bioconductor_footer | ropensci_footer | | :------------------------------------------------------------------------------------------------------: | :---------------------------------------------------------------------------------------------: |

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treeio documentation built on Nov. 21, 2020, 2:01 a.m.