drop.tip-methods: drop.tip method

In treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

Description

drop.tip method

drop.tip method

Usage

drop.tip(object, tip, ...)

drop.tip(object, tip, ...)

## S4 method for signature 'phylo'
drop.tip(object, tip, ...)

Arguments

object	A treedata or phylo object
tip	a vector of mode numeric or character specifying the tips to delete
...	additional parameters

Value

updated object

Author(s)

Casey Dunn http://dunnlab.org and Guangchuang Yu https://guangchuangyu.github.io

Source

drop.tip for phylo object is a wrapper method of ape::drop.tip from the ape package. The documentation you should read for the drop.tip function can be found here: drop.tip

See Also

drop.tip

Examples

nhxfile <- system.file("extdata/NHX", "ADH.nhx", package="treeio")
nhx <- read.nhx(nhxfile)
drop.tip(nhx, c("ADH2", "ADH1"))

Example output

'treedata' S4 object that stored information of
	 '/usr/local/lib/R/site-library/treeio/extdata/NHX/ADH.nhx'.

...@ tree: 
Phylogenetic tree with 4 tips and 3 internal nodes.

Tip labels:
[1] "ADHY" "ADHX" "ADH4" "ADH3"
Node labels:
[1]  9 10 12

Rooted; includes branch lengths.

with the following features available:
	'S',	'D',	'B'.

treeio documentation built on Nov. 21, 2020, 2:01 a.m.