read.jplace: read.jplace

In treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

Description

read jplace file

Usage

read.jplace(file)

Arguments

file	jplace file

Value

jplace instance

Author(s)

Guangchuang Yu

Examples

jp <- system.file("extdata", "sample.jplace", package="treeio")
read.jplace(jp)

Example output

Registered S3 method overwritten by 'treeio':
  method     from
  root.phylo ape 
treeio v1.14.3  For help: https://yulab-smu.top/treedata-book/

If you use treeio in published research, please cite:

LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, BR Jones, T Bradley, H Zhu, Y Guan, Y Jiang, G Yu. treeio: an R package for phylogenetic tree input and output with richly annotated and associated data. Molecular Biology and Evolution 2020, 37(2):599-603. doi: 10.1093/molbev/msz240

'treedata' S4 object that stored information of
	'/usr/lib/R/site-library/treeio/extdata/sample.jplace'.

...@ phylo: 
Phylogenetic tree with 13 tips and 12 internal nodes.

Tip labels:
  A, B, C, D, E, F, ...

Rooted; includes branch lengths.

with the following features available:
	'nplace'.

treeio documentation built on Nov. 21, 2020, 2:01 a.m.