read.r8s: read.r8s

In treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

Description

parse output from r8s

Usage

read.r8s(file)

Arguments

file	r8s output log file

Value

multiPhylo object

Author(s)

Guangchuang Yu

Examples

read.r8s(system.file("extdata/r8s", "H3_r8s_output.log", package="treeio"))

Example output

Registered S3 method overwritten by 'treeio':
  method     from
  root.phylo ape 
treeio v1.14.3  For help: https://yulab-smu.top/treedata-book/

If you use treeio in published research, please cite:

LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, BR Jones, T Bradley, H Zhu, Y Guan, Y Jiang, G Yu. treeio: an R package for phylogenetic tree input and output with richly annotated and associated data. Molecular Biology and Evolution 2020, 37(2):599-603. doi: 10.1093/molbev/msz240

3 phylogenetic trees

treeio documentation built on Nov. 21, 2020, 2:01 a.m.