read.nhx: read.nhx
In treeio: Base Classes and Functions for Phylogenetic Tree Input and Output
Description
Usage
Arguments
Value
Author(s)
Examples
Description
read nhx tree file
Usage
1
Arguments
file
nhx file
Value
nhx object
Author(s)
Guangchuang Yu https://guangchuangyu.github.io
Examples
1
2
nhxfile <- system.file("extdata/NHX", "ADH.nhx", package="treeio")
read.nhx(nhxfile)
Example output
'treedata' S4 object that stored information of
'/usr/local/lib/R/site-library/treeio/extdata/NHX/ADH.nhx'.
...@ tree:
Phylogenetic tree with 8 tips and 4 internal nodes.
Tip labels:
ADH2, ADH1, ADHY, ADHX, ADH4, ADH3, ...
Rooted; includes branch lengths.
with the following features available:
'S', 'D', 'B'.
treeio documentation built on Nov. 21, 2020, 2:01 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
read nhx tree file
Usage
1 |
Arguments
file |
nhx file |
Value
nhx object
Author(s)
Guangchuang Yu https://guangchuangyu.github.io
Examples
1 2 | nhxfile <- system.file("extdata/NHX", "ADH.nhx", package="treeio")
read.nhx(nhxfile)
|
Example output
'treedata' S4 object that stored information of
'/usr/local/lib/R/site-library/treeio/extdata/NHX/ADH.nhx'.
...@ tree:
Phylogenetic tree with 8 tips and 4 internal nodes.
Tip labels:
ADH2, ADH1, ADHY, ADHX, ADH4, ADH3, ...
Rooted; includes branch lengths.
with the following features available:
'S', 'D', 'B'.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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