odseq: Outlier detection in multiple sequence alignments

Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.

AuthorJosé Jiménez
Date of publicationNone
MaintainerJosé Jiménez <jose@jimenezluna.com>
LicenseMIT + file LICENSE
Version1.2.0

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Files

odseq/DESCRIPTION
odseq/LICENSE
odseq/NAMESPACE
odseq/R
odseq/R/odmix.R odseq/R/odseq.R odseq/R/odseq_unaligned.R
odseq/build
odseq/build/partial.rdb
odseq/build/vignette.rds
odseq/data
odseq/data/seqs.RData
odseq/inst
odseq/inst/doc
odseq/inst/doc/vignette.R
odseq/inst/doc/vignette.Rmd
odseq/inst/doc/vignette.pdf
odseq/man
odseq/man/odmix.Rd odseq/man/odseq-package.Rd odseq/man/odseq.Rd odseq/man/odseq_unaligned.Rd odseq/man/seqs.Rd
odseq/vignettes
odseq/vignettes/vignette.Rmd

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