odseq: Outlier detection in multiple sequence alignments

Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.

Package details

AuthorJosé Jiménez
Bioconductor views Alignment MultipleSequenceAlignment
MaintainerJosé Jiménez <jose@jimenezluna.com>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the odseq package in your browser

Any scripts or data that you put into this service are public.

odseq documentation built on Nov. 8, 2020, 6:50 p.m.