GuangchuangYu/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.

Getting started

Package details

Bioconductor views Alignment Annotation Clustering DataImport DataRepresentation MultipleSequenceAlignment Phylogenetics Software
Maintainer
LicenseArtistic-2.0
Version1.21.0
URL https://github.com/YuLab-SMU/treeio (devel) https://docs.ropensci.org/treeio/ (docs) https://yulab-smu.top/treedata-book/ (book) https://doi.org/10.1093/molbev/msz240 (paper)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("GuangchuangYu/treeio")
GuangchuangYu/treeio documentation built on May 5, 2022, 3:32 a.m.