spt-methods: spt method

In GuangchuangYu/treeio: Base Classes and Functions for Phylogenetic Tree Input and Output

spt method

Description

spt method

Usage

spt(x, from, to, weights = NULL, ...)

Arguments

x	a igraph object
from	a specific node of network.
to	other nodes of the network, length of it must be larger than 2.
weights	a numeric vector giving edge weights or a character. If this is NULL and the graph has a weight edge attribute, then the attribute is used. If this is NA then no weights are used even if the graph has a weight attribute. If this is a character, the graph has the edge attribute which is numeric, then it will be used, default is NULL.
...	additional parameters

Value

phylo object

Examples

library(igraph)
set.seed(123)
g <- igraph::sample_gnp(100, .1) %>% 
     set_edge_attr(name='weight', value=abs(rnorm(E(.),3)))
tr1 <- spt(g, from = 6, to=V(g), weights = 'weight')
tr1
tr2 <- spt(g, from = 6, to = V(g), weights = NA)
tr2

GuangchuangYu/treeio documentation built on April 12, 2024, 5:25 a.m.