R4RNA: An R package for RNA visualization and analysis

A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.

AuthorDaniel Lai, Irmtraud Meyer <irmtraud.meyer@cantab.net>
Date of publicationNone
MaintainerDaniel Lai <jujubix@cs.ubc.ca>
LicenseGPL-3
Version1.2.0
http://www.e-rna.org/r-chie/

View on Bioconductor

Files in this package

R4RNA/DESCRIPTION
R4RNA/NAMESPACE
R4RNA/NEWS
R4RNA/R
R4RNA/R/io.R R4RNA/R/misc.R R4RNA/R/plot.R R4RNA/R/stats.R
R4RNA/build
R4RNA/build/vignette.rds
R4RNA/data
R4RNA/data/helix.RData
R4RNA/inst
R4RNA/inst/CITATION
R4RNA/inst/doc
R4RNA/inst/doc/R4RNA.R
R4RNA/inst/doc/R4RNA.Rnw
R4RNA/inst/doc/R4RNA.pdf
R4RNA/inst/extdata
R4RNA/inst/extdata/bpseq.txt
R4RNA/inst/extdata/connect.txt
R4RNA/inst/extdata/fasta.txt
R4RNA/inst/extdata/helix.txt
R4RNA/inst/extdata/vienna.txt
R4RNA/man
R4RNA/man/R4RNA-package.Rd R4RNA/man/alignmentStatistics.Rd R4RNA/man/as.helix.Rd R4RNA/man/basepairFrequency.Rd R4RNA/man/blankPlot.Rd R4RNA/man/colourHelices.Rd R4RNA/man/expandCollapseHelix.Rd R4RNA/man/helix.Rd R4RNA/man/logicalHelix.Rd R4RNA/man/logseq.Rd R4RNA/man/plotCovariance.Rd R4RNA/man/plotHelix.Rd R4RNA/man/readStructure.Rd R4RNA/man/structureMismatchScore.Rd R4RNA/man/unknottedGroups.Rd R4RNA/man/viennaToHelix.Rd R4RNA/man/writeHelix.Rd
R4RNA/vignettes
R4RNA/vignettes/R4RNA.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.