An R package for RNA visualization and analysis

alignmentStatistics | Compute statistics for a multiple sequence alignments |

as.helix | Coerce to a Helix Data Frame |

basepairFrequency | Calculates the frequency of each basepair |

blankPlot | Create a blank plotting canvas |

colourHelices | Assign colours to helices |

expandCollapseHelix | Expand or collapse helices to and from basepairs |

helix | Helices predicted by TRANSAT with p-values |

logicalHelix | Logical filters of helix by type |

logseq | Log base 10 sequence, floor and ceiling |

plotCovariance | Plot nucleotide sequence coloured by covariance |

plotHelix | Plots helices in arc diagram |

R4RNA-package | An R package for RNA visualization and analysis |

readStructure | Read secondary structure file |

structureMismatchScore | Scores how a basepair structure fits a sequence |

unknottedGroups | Partition basepairs into unknotted groups |

viennaToHelix | Convert helix structures to and from other formats |

writeHelix | Write out a helix data frame into a text file |

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