sitePath: Detection of site fixation in molecular evolution

The package does hierarchical search for fixation mutations given multiple sequence alignment and phylogenetic tree. These fixation mutations can be specific to a phylogenetic lineages or shared by multiple lineages. The package also provides visualization of these mutations on the tree.

Package details

AuthorChengyang Ji [aut, cre, cph] (<>), Aiping Wu [ths]
Bioconductor views Alignment MultipleSequenceAlignment Phylogenetics SNP Software
MaintainerChengyang Ji <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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sitePath documentation built on April 17, 2021, 6:05 p.m.