sitePath: Detection of site fixation in molecular evolution

The package does hierarchical search for fixation mutations given multiple sequence alignment and phylogenetic tree. These fixation mutations can be specific to a phylogenetic lineages or shared by multiple lineages. The package also provides visualization of these mutations on the tree.

Package details

AuthorChengyang Ji [aut, cre, cph] (<https://orcid.org/0000-0001-9258-5453>), Aiping Wu [ths]
Bioconductor views Alignment MultipleSequenceAlignment Phylogenetics SNP Software
MaintainerChengyang Ji <chengyang.ji12@alumni.xjtlu.edu.cn>
LicenseMIT + file LICENSE
Version1.6.4
URL https://wuaipinglab.github.io/sitePath/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sitePath")

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sitePath documentation built on April 1, 2021, 6:01 p.m.