Files in sitePath

Detection of site fixation in molecular evolution

NEWS

README.md

NAMESPACE

DESCRIPTION

LICENSE

R/RcppExports.R R/printFunctions.R R/as.data.frame.R R/allSitesName.R R/fixationSites.R R/extractTips.R R/lineagePath.R R/plotSingleSite.R R/fixationPath.R R/staticData.R R/reexports.R R/parallelSites.R R/paraFixSites.R R/groupTips.R R/fixationIndels.R R/SNPsites.R R/sitePath-deprecated.R R/plotMutSites.R R/siteNumbering.R R/extractSite.R R/plotFunctions.R R/sitesMinEntropy.R R/addMSA.R

src/RcppExports.cpp

src/lumpyCluster.cpp

src/searchNode.cpp

src/util.cpp

src/searchTree.cpp

src/treemer.h

src/lumpyCluster.h

src/treemer.cpp

src/minEntropy.cpp

src/minEntropy.h

inst/doc/sitePath.R

inst/doc/sitePath.html

inst/doc/sitePath.Rmd

inst/extdata/WNV.newick

inst/extdata/ZIKV.newick

inst/extdata/ZIKV.fasta

build/vignette.rds

tests/testthat.R tests/testthat/test-multiprocessing.R tests/testthat/test-printFunctions.R tests/testthat/test-sitesMinEntropy.R tests/testthat/test-allSitesName.R tests/testthat/test-lineagePath.R tests/testthat/test-groupTips.R tests/testthat/test-as.data.frame.R tests/testthat/test-fixationSites.R tests/testthat/test-paraFixSites.R tests/testthat/test-similarityMatrix.R tests/testthat/test-fixationPath.R tests/testthat/test-plotSingleSite.R tests/testthat/test-siteNumbering.R tests/testthat/test-SNPsites.R tests/testthat/test-plotFunctions.R tests/testthat/test-addMSA.R tests/testthat/test-parallelSites.R tests/testthat/test-reexports.R vignettes/sitePath.Rmd

data/sars2_tree.rda

data/zikv_tree_reduced.rda

data/sars2_align.rda

data/zikv_align_reduced.rda

data/zikv_align.rda

data/zikv_tree.rda

data/h3n2_tree.rda

data/h3n2_tree_reduced.rda

data/h3n2_align.rda

data/h3n2_align_reduced.rda

man/allSitesName.Rd man/as.data.frame.Rd man/reexports.Rd man/lineagePath.Rd man/sitesMinEntropy.Rd man/zikv_align.Rd man/sars2_tree.Rd man/parallelSites.Rd man/groupTips.Rd man/fixationIndels.Rd man/setSiteNumbering.Rd man/paraFixSites.Rd man/extractSite.Rd man/zikv_tree.Rd man/similarityMatrix.Rd man/addMSA.Rd man/SNPsites.Rd man/plotMutSites.Rd man/extractTips.Rd man/plotFunctions.Rd man/fixationPath.Rd man/h3n2_tree.Rd man/sars2_align.Rd man/fixationSites.Rd man/h3n2_align.Rd man/plotSingleSite.Rd man/sitePath-deprecated.Rd

sitePath documentation built on April 17, 2021, 6:05 p.m.