similarityMatrix: Similarity between sequences
In sitePath: Detection of site fixation in molecular evolution
Description
Usage
Arguments
Value
Examples
Description
Get similarity between aligned sequences with gap ignored.
Usage
1
similarityMatrix(tree)
Arguments
tree
The return from addMSA function.
Value
A diagonal matrix of similarity between sequences.
Examples
1
2
3
4
data(zikv_tree)
data(zikv_align)
tree <- addMSA(zikv_tree, alignment = zikv_align)
simMatrix <- similarityMatrix(tree)
sitePath documentation built on April 17, 2021, 6:05 p.m.
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Description Usage Arguments Value Examples
Description
Get similarity between aligned sequences with gap ignored.
Usage
1 | similarityMatrix(tree)
|
Arguments
tree |
The return from |
Value
A diagonal matrix of similarity between sequences.
Examples
1 2 3 4 | data(zikv_tree)
data(zikv_align)
tree <- addMSA(zikv_tree, alignment = zikv_align)
simMatrix <- similarityMatrix(tree)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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