extractSite: Extract tips for a single site

In sitePath: Detection of site fixation in molecular evolution

Description

The functions in sitePath usually include the results on more than one site. The function extractSite can be used to extract the predicted result on a single site.

Usage

extractSite(x, site, ...)

## S3 method for class 'fixationSites'
extractSite(x, site, ...)

Arguments

x	A fixationSites or a parallelSites object. More type will be supported in the later version.
site	A site included in the result.
...	Other arguments

Value

The predicted result of a single site

Examples

data(zikv_tree_reduced)
data(zikv_align_reduced)
tree <- addMSA(zikv_tree_reduced, alignment = zikv_align_reduced)
mutations <- fixationSites(lineagePath(tree))
extractSite(mutations, 139)

sitePath documentation built on April 17, 2021, 6:05 p.m.