wuaipinglab/sitePath: Detection of site fixation in molecular evolution

The package does hierarchical search for fixation mutations given multiple sequence alignment and phylogenetic tree. These fixation mutations can be specific to a phylogenetic lineages or shared by multiple lineages. The package also provides visualization of these mutations on the tree.

Getting started

Package details

Bioconductor views Alignment MultipleSequenceAlignment Phylogenetics SNP Software
LicenseMIT + file LICENSE
URL https://wuaipinglab.github.io/sitePath/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
wuaipinglab/sitePath documentation built on June 16, 2021, 7:20 p.m.