plotParallelSites: Plot the result of fixation sites

View source: R/plotParallelSites.R

plotParallelSitesR Documentation

Plot the result of fixation sites

Description

Visualize the results of paraFixSites

Usage

plotParallelSites(x, ...)

## S3 method for class 'parallelSites'
plotParallelSites(x, site = NULL, ...)

## S3 method for class 'paraFixSites'
plotParallelSites(x, site = NULL, ...)

Arguments

x

return from paraFixSites

...

further arguments passed to or from other methods.

site

the number of the site according to setSiteNumbering

Value

A ggplot object.

Examples

data(zikv_tree)
data(zikv_align)
paraFix <- paraFixSites(zikv_tree, alignment = zikv_align)
plotParallelSites(paraFix)

wuaipinglab/sitePath documentation built on Sept. 26, 2022, 10:16 p.m.