Mapping, quantification and variant analysis of sequencing data

Global functions | |
---|---|

.averaging_transform | Source code |

.cellCounts_try_cellbarcode | Source code |

.check_and_NormPath | Source code |

.check_string_param | Source code |

.convert.sample_index.id.to.seq | Source code |

.dataURL | Source code |

.findCommonVariants_inner | Source code |

.find_best_cellbarcode | Source code |

.flatten.and.numeric | Source code |

.index.names.to.sheet | Source code |

.is.64bit.system | Source code |

.load.delete.summary | Source code |

.mySGT | Source code |

.mySGTsorted | Source code |

.one.convert.sample_index.id.to.seq | Source code |

.retrieve.tmp.parameters | Source code |

.rstest | Source code |

.simFragments | Source code |

.simple.Good.Turing.Freq | Source code |

.smoothed | Source code |

.stop_quietly | Source code Source code |

.write.tmp.parameters | Source code |

RsubreadUsersGuide | Man page Source code |

align | Man page Source code |

atgcContent | Man page Source code |

buildindex | Man page Source code |

cellCounts | Man page |

detectionCall | Man page Source code |

detectionCallAnnotation | Man page Source code |

exactSNP | Man page Source code |

featureCounts | Man page Source code |

findCommonVariants | Man page Source code |

flattenGTF | Man page Source code |

getInBuiltAnnotation | Man page Source code |

processExons | Man page Source code |

promoterRegions | Man page Source code |

propmapped | Man page Source code |

qualityScores | Man page Source code |

removeDupReads | Man page Source code |

repair | Man page Source code |

sam2bed | Man page Source code |

scanFasta | Man page Source code |

simReads | Man page Source code |

subjunc | Man page Source code |

sublong | Man page Source code |

txUnique | Man page Source code |

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