detectionCall: Determine detection p values for each gene in an RNA-seq...

Description Usage Arguments Value Author(s)

View source: R/detectionCall.R

Description

Use GC content adjusted background read counts to determine the detection p values for each gene

Usage

1
detectionCall(dataset, species="hg", plot=FALSE)

Arguments

dataset

a character string giving the filename of a SAM format file, which is the output of read alignment.

species

a character string specifing the species. Options are hg and mm.

plot

logical, indicating whether a density plot of detection p values will be generated.

Value

A data frame which includes detection p values and annotation information for each genes.

Author(s)

Zhiyin Dai and Wei Shi


Rsubread documentation built on Nov. 9, 2018, 6 p.m.