detectionCall: Determine Detection P Values for Each Gene in an RNA-seq...

In Rsubread: Mapping, quantification and variant analysis of sequencing data

Description

Use GC content adjusted background read counts to determine the detection p values for each gene

Usage

detectionCall(

    dataset,
    species = "hg",
    plot = FALSE)

Arguments

dataset	a character string giving the filename of a SAM format file, which is the output of read alignment.
species	a character string specifing the species. Options are hg and mm.
plot	logical indicating whether a density plot of detection p values will be generated.

Value

A data frame which includes detection p values and annotation information for each gene.

Author(s)

Zhiyin Dai and Wei Shi

Rsubread documentation built on March 17, 2021, 6:01 p.m.