Description Usage Arguments Details Value Author(s)
View source: R/detectionCallAnnotation.R
This is for internal use only. This function generates the annotation files for calculating p values in the detectionCall
function.
1 2 3 4 | detectionCallAnnotation(
species = "hg",
binsize = 2000)
|
species |
a character string specifying the species to analyase |
binsize |
an integer value specifying the bin-size of integenic region |
This is an internal function and should not be called by users directly.
It takes as input the annotation files produced by processExons
function, calculates GC percentages for each exon of genes and also for intergenic regions and add GC info into the annotations.
The new annotation data are then saved to files which can be used by detectionCall
function for calling absolutely expressed genes.
Two annotation files, which contain GC content for exons of genes and for intergenic regions respectively, are written to the current working directory. This function returns a NULL
object.
Zhiyin Dai and Wei Shi
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