RachelQueen1/Spaniel: Spatial Transcriptomics Analysis

Spaniel includes a series of tools to aid the quality control and analysis of Spatial Transcriptomics data. Spaniel can import data from either the original Spatial Transcriptomics system or 10X Visium technology. The package contains functions to create a SingleCellExperiment Seurat object and provides a method of loading a histologial image into R. The spanielPlot function allows visualisation of metrics contained within the S4 object overlaid onto the image of the tissue.

Getting started

Package details

Bioconductor views Clustering Coverage DataImport DataRepresentation GeneExpression Infrastructure Normalization Preprocessing QualityControl RNASeq Sequencing SingleCell Software Transcriptomics Visualization
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
RachelQueen1/Spaniel documentation built on May 20, 2021, 5:21 p.m.