Files in RachelQueen1/Spaniel

Spatial Transcriptomics Analysis

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS

NEWS.md R/addClusterCols.R R/addCoordinates.R R/createObjects.R R/parseImage.R R/removeSpots.R R/shinySpaniel.R R/spanielPlot.R R/spanielPlotInternals.R R/tenX.R R/utilities.R README.md

inst/1000L2_barcodes.txt

inst/HE_Rep1_resized.jpg

inst/ShinySpaniel/app.R

inst/extdata/counts.rds

inst/extdata/image.rds

inst/extdata/outs/filtered_feature_bc_matrix/barcodes.tsv.gz

inst/extdata/outs/filtered_feature_bc_matrix/features.tsv.gz

inst/extdata/outs/filtered_feature_bc_matrix/matrix.mtx.gz

inst/extdata/outs/spatial/scalefactors_json.json

inst/extdata/outs/spatial/tissue_lowres_image.png

inst/extdata/outs/spatial/tissue_positions_list.csv

inst/extdata/sceData.rds

inst/points_to_remove.txt

inst/spot_positions.tsv

man/addCoordinates.Rd man/createSCE.Rd man/createSeurat.Rd man/createVisiumSCE.Rd man/markClusterCol.Rd man/parseImage.Rd man/removeSpots.Rd man/runShinySpaniel.Rd man/selectSpots.Rd man/spanielPlot.Rd vignettes/spaniel-vignette-tenX-import.R vignettes/spaniel-vignette-tenX-import.Rmd

vignettes/spaniel-vignette-tenX-import.html

RachelQueen1/Spaniel documentation built on May 20, 2021, 5:21 p.m.