createVisiumSCE: createVisiumSCE
In RachelQueen1/Spaniel: Spatial Transcriptomics Analysis
Description
Usage
Arguments
Value
Examples
Description
A function to select to import 10X data into an SCE object
Usage
1
createVisiumSCE(tenXDir = "../outs", resolution = "Low")
Arguments
tenXDir
The path to Space Ranger outs directory containing spatial
directory and filtered_feature_bc_matric
resolution
Resolution of the tissue image to be used for plotting.
Can be either "High", or "Low". Default is "Low".
Value
SingleCellExperimentObject
Examples
1
2
tenXDir <- file.path(system.file(package = "Spaniel"), "extdata/outs")
sce <- createVisiumSCE(tenXDir, resolution = "Low")
RachelQueen1/Spaniel documentation built on May 20, 2021, 5:21 p.m.
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Description Usage Arguments Value Examples
Description
A function to select to import 10X data into an SCE object
Usage
1 | createVisiumSCE(tenXDir = "../outs", resolution = "Low")
|
Arguments
tenXDir |
The path to Space Ranger outs directory containing spatial directory and filtered_feature_bc_matric |
resolution |
Resolution of the tissue image to be used for plotting. Can be either "High", or "Low". Default is "Low". |
Value
SingleCellExperimentObject
Examples
1 2 | tenXDir <- file.path(system.file(package = "Spaniel"), "extdata/outs")
sce <- createVisiumSCE(tenXDir, resolution = "Low")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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