joshstolz/brainstorm: Validating Sample Identiy Through RNA-seq and DNA Genotyping Correlation
Perform quality control analysis to validate the identity of samples between multiple DNA or RNA samples, and between DNA and RNA. Preprocess VCF files into integer SNP arrays. Correlate SNPs, and form groups of suspected related samples. This is useful to identify and resolve mislabled or "swapped" samples in the dataset.
Getting started
Browse package contents
Package details |
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| Bioconductor views | GenotypingArray Preprocessing QualityControl RNAseq SNP Software |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 0.99.0 |
| URL | https://github.com/LieberInstitute/brainstorm |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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