Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.
|Author||Michael Love [cre,aut], Charlotte Soneson [aut], Mark Robinson [aut], Rob Patro [ctb], Andrew Parker Morgan [ctb], Ryan C. Thompson [ctb], Matt Shirley [ctb], Avi Srivastava [ctb]|
|Bioconductor views||DataImport GeneExpression ImmunoOncology Preprocessing RNASeq Transcription Transcriptomics|
|Maintainer||Michael Love <[email protected]>|
|Package repository||View on Bioconductor|
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