tximport: Import and summarize transcript-level estimates for gene-level analysis

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Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

Author
Michael Love, Charlotte Soneson, Mark Robinson
Date of publication
None
Maintainer
Michael Love <michaelisaiahlove@gmail.com>
License
GPL (>=2)
Version
1.2.0

View on Bioconductor

Man pages

tximport
Import transcript-level abundances and estimated counts for...

Files in this package

tximport/DESCRIPTION
tximport/NAMESPACE
tximport/NEWS
tximport/R
tximport/R/tximport.R
tximport/README.md
tximport/build
tximport/build/vignette.rds
tximport/inst
tximport/inst/CITATION
tximport/inst/doc
tximport/inst/doc/tximport.R
tximport/inst/doc/tximport.Rmd
tximport/inst/doc/tximport.html
tximport/man
tximport/man/tximport.Rd
tximport/tests
tximport/tests/testthat
tximport/tests/testthat.R
tximport/tests/testthat/test_counts_from_abundance.R
tximport/tests/testthat/test_one_sample.R
tximport/tests/testthat/test_salmon.R
tximport/vignettes
tximport/vignettes/tximport.Rmd