tximport: Import and summarize transcript-level estimates for transcript- and gene-level analysis
Version 1.8.0

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

Package details

AuthorMichael Love [cre,aut], Charlotte Soneson [aut], Mark Robinson [aut], Rob Patro [ctb], Andrew Parker Morgan [ctb], Ryan C. Thompson [ctb], Matt Shirley [ctb]
Bioconductor views DataImport GeneExpression RNASeq Transcription
MaintainerMichael Love <[email protected]>
LicenseGPL (>=2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

Try the tximport package in your browser

Any scripts or data that you put into this service are public.

tximport documentation built on May 2, 2018, 3:31 a.m.