tximport: Import and summarize transcript-level estimates for transcript- and gene-level analysis

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

Package details

AuthorMichael Love [cre,aut], Charlotte Soneson [aut], Mark Robinson [aut], Rob Patro [ctb], Andrew Parker Morgan [ctb], Ryan C. Thompson [ctb], Matt Shirley [ctb], Avi Srivastava [ctb]
Bioconductor views DataImport GeneExpression ImmunoOncology Preprocessing RNASeq Transcription Transcriptomics
MaintainerMichael Love <[email protected]>
LicenseGPL (>=2)
URL https://github.com/mikelove/tximport
Package repositoryView on Bioconductor
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tximport documentation built on Oct. 31, 2019, 3:12 a.m.