The tximport package is designed to simplify import of transcript-level abundances (TPM), estimated counts, and effective lengths from a variety of upstream tools, for downstream transcript-level or gene-level analysis. It has no dependencies beyond R, so as to minimize requirements for downstream packages making use of tximport.
The main function has the same name as the package:
tximport - with key arguments:
All software-related questions should be posted to the Bioconductor Support Site:
The code can be viewed at the GitHub repository, which also lists the contributor code of conduct:
Charlotte Soneson, Michael I. Love, Mark D. Robinson
Charlotte Soneson, Michael I. Love, Mark D. Robinson (2015) Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences. F1000Research. http://doi.org/10.12688/f1000research.7563
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