Import and summarize transcript-level estimates for transcript- and gene-level analysis
Description of methods and analysis described in:
Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream statistical analysis packages such as edgeR, DESeq2, limma-voom. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.
See examples in the vignette.
txOut=TRUEcan be used to generate transcript-level matrices.
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