Import and summarize transcript-level estimates for transcript- and gene-level analysis

Description of methods and analysis described in:

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream statistical analysis packages such as edgeR, DESeq2, limma-voom. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

See examples in the vignette.


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tximport documentation built on Nov. 8, 2020, 8:20 p.m.