summarizeToGene: Summarize estimated quantitites to gene-level

Description Usage Arguments Value See Also

Description

Summarizes abundances, counts, lengths, (and inferential replicates or variance) from transcript- to gene-level.

Usage

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summarizeToGene(object, ...)

## S4 method for signature 'list'
summarizeToGene(object, tx2gene, varReduce = FALSE,
  ignoreTxVersion = FALSE, ignoreAfterBar = FALSE,
  countsFromAbundance = c("no", "scaledTPM", "lengthScaledTPM"))

Arguments

object

the list of matrices of trancript-level abundances, counts, lengths produced by tximport, with a countsFromAbundance element that tells how the counts were generated.

...

additional arguments, ignored

tx2gene

see tximport

varReduce

see tximport

ignoreTxVersion

see tximport

ignoreAfterBar

see tximport

countsFromAbundance

see tximport

Value

a list of matrices of gene-level abundances, counts, lengths, (and inferential replicates or variance if inferential replicates are present).

See Also

tximport


tximport documentation built on March 24, 2020, 2 a.m.