FourCSeq: Package analyse 4C sequencing data
Version 1.10.0

FourCSeq is an R package dedicated to the analysis of (multiplexed) 4C sequencing data. The package provides a pipeline to detect specific interactions between DNA elements and identify differential interactions between conditions. The statistical analysis in R starts with individual bam files for each sample as inputs. To obtain these files, the package contains a python script (extdata/python/demultiplex.py) to demultiplex libraries and trim off primer sequences. With a standard alignment software the required bam files can be then be generated.

Getting started

Package details

AuthorFelix A. Klein, EMBL Heidelberg
Bioconductor views Preprocessing Sequencing Software
MaintainerFelix A. Klein <felix.klein@embl.de>
LicenseGPL (>= 3)
Version1.10.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("FourCSeq")

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FourCSeq documentation built on May 31, 2017, 11:17 a.m.