normalizeRPM: Normalize count data to rpm

In FourCSeq: Package analyse 4C sequencing data

Description

normalizeRPM Normalizes the counts of each experiment to RPM.

Usage

normalizeRPM(
  object,
  assay = "counts",
  normalized = "rpm",
  removeHighestValues = 0
)

Arguments

object	A FourC object.
assay	Character vector selecting the assay of the FourC object that should be normalized.
normalized	Character vector specifying the assay name of the normalized data.
removeHighestValues	Defines the number of highest count values that should be removed before the library sizes are calculated in the denominator. normalized containing the normalized data.

Author(s)

Felix A. Klein, [e-mail]

See Also

FourC, combineFragEnds

Examples

 

                       
data(fc, package="FourCSeq")

fc <- combineFragEnds(fc)
fc

fc <- normalizeRPM(fc)
fc

FourCSeq documentation built on Nov. 8, 2020, 7:08 p.m.