getDistAroundVp: getDistAroundVp

In FourCSeq: Package analyse 4C sequencing data

Description

getDistAroundVp Add the distance information for a given viewpoint to the fragment data.

Usage

getDistAroundVp(vp, vpData, fragData)

Arguments

vp	A single character string with the selected viewpoint.
vpData	DataFrame containing the column data of the FourC object.
fragData	GRanges object containing the row data (fragment data) of the FourC object.

Details

Mid positions of the fragments are defined as start + (end - start)

Value

Updated GRanges object that contains the distance from the viewpoint for the fragments on the viewpoint chromosome.

Examples

data(fc, package="FourCSeq")

fragmentDataWithDistance <- getDistAroundVp("ap", colData(fc), rowRanges(fc))

FourCSeq documentation built on Nov. 8, 2020, 7:08 p.m.