plotZScores: Plot z-score results.

In FourCSeq: Package analyse 4C sequencing data

Description

plotZScores generates plots to check the z-score calculation.

Usage

plotZScores(
  object,
  cols = NULL,
  plotWindows = c(1e+05, 1e+06),
  controls = NULL,
  textsize = 20,
  txdb = NULL,
  plotSingle = FALSE
)

Arguments

object	A FourC object.
cols	A character or numeric vector used to subset the columns of object.
plotWindows	Window sizes around the viewpoint for which plots are generated.
controls	Auxiliary GRanges object that contains information about the viewpoint and closest gene TSS.
textsize	Plot parameter passed to the plotting function if
txdb	Auxiliary TranscriptDb object that contains gene models for the investigated organism.
plotSingle	If set to true each selected column will be plotted in a single plot.

Details

Plots are generated to visualize the results of the getZScores function

Author(s)

Felix A. Klein, [e-mail]

See Also

FourC, getZScores, distFitMonotone, distFitMonotoneSymmetric

Examples

                       
data(fcf, package="FourCSeq")

plotZScores(fcf)
 

FourCSeq documentation built on Nov. 8, 2020, 7:08 p.m.